Entering edit mode
3.7 years ago
mail2steff
▴
70
Dear All,
I have done multiple sequence alignment using mafft and got the alignment. But I could not get the alignment score for the MSA results. Where do I find alignment score for this?. I also tried t-coffee with the mafft-method. I got the same alignment as in Mafft website. I have attached the results of my msa.
http://tcoffee.crg.cat/apps/tcoffee/result?rid=4c2b758a
But the score are weird.
*
BAD AVG GOOD
*
V13_V34_overlap : 100
V1_V3-03e56d38c : 100
V3-V4-08e0cead1 : 100
cons : 100
I got consensus score as 100 even though they are not perfectly align.
Could anyone please guide me this?