annotation with Augustus

Question

[Ric]

Hi, we have a plant genome and would like to create an annotation with Augustus. However, I am not sure about the following few parameters.

• noInFrameStop=false
• allow_hinted_splicesites=atac
• genemodel=partial or --genemodel=complete

Which settings are appropriate for a plant genome?

Thank you in advance

Answer 1

[Ric]

Has been answered here

[Kevin Blighe]

Thanks for posting the link, Ric.