Clustalw2 installation problem in mac

Question

[padanaabdullah]

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/iosfwd:209:32: note: 
      template is declared here
    class _LIBCPP_TEMPLATE_VIS basic_string;
                               ^
2 errors generated.
make[3]: *** [VectorOutOfRange.o] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1

Anybody, guide me about this error

[GenoMax]

Which macOS are you using? If you are trying to use it on catalina (macOS v.10.5.x) this is likely not going to work since clustalW is probably a 32-bit application.

[padanaabdullah]

yes i am using macOS Catalina (10.15.6), no i don't want dmg. i am downloading by command line. i have need to install for adding in Path.

[GenoMax]

Please don't add the same content in multiple answers.

[zorbax]

did you get this error with the dmg installer? You need to provide more information.

[padanaabdullah]

yes i am using macOS Catalina (10.15.6), no i don't want dmg. i am downloading by command line. i have need to install for adding in Path.

Answer 1

[zorbax]

You are using a gcc compiler >= 10 if you have the latest version of Xcode tools. You can use a previous version of gcc with brew or if you prefer you can install it with conda and solve the issue:

conda create -n clustalw2 -c biobuilds -y clustalw

[GenoMax]

Do you know first hand if this is going to work on macOS catalina, which only allows 64-bit applications?

[zorbax]

I've just installed it for this example https://pbs.twimg.com/media/Ef3lhb2WsAIglv0?format=jpg&name=medium Catalina 10.15.3

[padanaabdullah]

Successfully install after following your instruction but still not showing in Path variable. How i can solve this. Give me one more favor ( 1) https://ibb.co/dtw4VhH (2) https://ibb.co/tJ1r4C6

(3) https://ibb.co/55g95S6

[zorbax]

you don't need modify anything in your bashrc/bash_profile, only load the conda environment and clustal will be available in your PATH "inside" the conda env. Every time that you want to use clustal you should use the activation/deactivation steps.

[GenoMax]

Conda environment for clustalw needs to be active.

[padanaabdullah]

ok but still not available, if search clustalw or clustalw2 from terminal.

i am using one code that still showing clustalw is missing.

[GenoMax]

$ conda activate clustalw2
$ which clustalw2
/path_to/miniconda3/envs/clustalw2/bin/clustalw2

[padanaabdullah]

Please check it after close this terminal. For default because i need to use code and for code should be default , you try it after close the terminal again. Thank you so much.