How to retrieve miRNA expression p-values using 'Olig' R package

Question

[anand]

Hello, I am working on Affymetrix miRNA.3.0 and have normalized my data using 'oligo' followed by differential expression analysis using limma package.

I was wondering if someone could help me with retrieving miRNA expression p-values after oligo normalization?

DA

[ATpoint]

Please read the limma user guide, it contains all necessary code.

Answer 1

[Kevin Blighe]

If you have already performed differential expression analysis, then use limma::toptable() to derive the test statistics.

Kevin