Question: How to retrieve miRNA expression p-values using 'Olig' R package
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gravatar for anand
7 weeks ago by
anand0
anand0 wrote:

Hello, I am working on Affymetrix miRNA.3.0 and have normalized my data using 'oligo' followed by differential expression analysis using limma package.

I was wondering if someone could help me with retrieving miRNA expression p-values after oligo normalization?

DA

R • 108 views
ADD COMMENTlink modified 7 weeks ago by Kevin Blighe66k • written 7 weeks ago by anand0

Please read the limma user guide, it contains all necessary code.

ADD REPLYlink written 7 weeks ago by ATpoint40k
0
gravatar for Kevin Blighe
7 weeks ago by
Kevin Blighe66k
Kevin Blighe66k wrote:

If you have already performed differential expression analysis, then use limma::toptable() to derive the test statistics.

Kevin

ADD COMMENTlink written 7 weeks ago by Kevin Blighe66k
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