Entering edit mode
3.6 years ago
chiagozieduru
•
0
Hi I am trying to run a DEG analysis for two different datasets. I want to normalize my datasets TOGETHER and then combine the expression. However, the platforms are different for the two datasets; one is a hybrid of GPL96(HG-U133A) and GPL97(HG-U133B) while the second dataset's platform is GPL10558. please how do I combine the two datasets to be able to normalize them accordingly before running the DEG analysis?
what R codes and tools should I use for the normalization?
will doing the normalization separately affect the DEG results?
Edit your question and remove the all caps, especially from the title. It is rude to use all caps.