Question: Blast output representation
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gravatar for apekshasharma7777
4 days ago by
apekshasharma77770 wrote:

Hi, Is it possible to represent the blast output I got in the form of a histogram or pie-chart? If yes, then how? I have the output using a local version of blast. I have the outputs in a pairwise alignment format as well as the one displaying the concise results.

alignment • 51 views
ADD COMMENTlink written 4 days ago by apekshasharma77770

I can imagine the use for histogram (e.g. to plot HSP score distributions) and pie-chart (e.g. to plot % of sequences from the db hit by your query), but this is limited to special use-cases. It really depends on what you want to show.

ADD REPLYlink modified 4 days ago • written 4 days ago by massa.kassa.sc3na270

Say for showing the sequence similarity or to show the orthologs. Or, to show sequence variation between the orthologs. Is there any way for me to show the common genes and the unique genes from the output?

ADD REPLYlink written 4 days ago by apekshasharma77770

Say for showing the sequence similarity or to show the orthologs.

You should consider doing multiple sequence alignments/phylogenetic trees then.

ADD REPLYlink written 4 days ago by genomax89k
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