Entering edit mode
3.6 years ago
mauricio.1313
•
0
Hi! I want to do an alignment for 743 viral genomes (27-30 kb approximately) in MAFFT. All genomes are complete and downloaded from NCBI virus. I want to do the best alignment and have already performed 5 test alignments, but I need your suggestions and experience to get the best possible result.
What parameter do you suggest to use for a case like this? Thank you!
If these virii are closely related then you should be fine using default settings. Depending on alignment you get some manual editing may be warranted afterwards.