Question: Operon Annotations For Bacterial Genomes?
0
gravatar for Tianyang Li
6.9 years ago by
Tianyang Li490
Beijing, China
Tianyang Li490 wrote:

Hi,

Are there databases containing operon and gene annotations for bacterial genomes?

Apparently in NCBI or EMBL there are no operon annotations for these bacterial genomes that I downloaded:

  • Escherichia coli str. K-12 substr. MG1655
  • Prochlorococcus marinus MED4
  • Rhodobacter sphaeroides 2.4.1
genome annotation database • 2.2k views
ADD COMMENTlink modified 6.9 years ago by Asaf5.5k • written 6.9 years ago by Tianyang Li490
1
gravatar for Michael Dondrup
6.9 years ago by
Bergen, Norway
Michael Dondrup46k wrote:

How about OperonDB? These are afaik automatic predictions, so I would treat them with care. They at least contain your E. coli and Rhodobacter strains , but only different P. marinus strains. If the differences strain matter at all, who knows...

ADD COMMENTlink modified 6.9 years ago • written 6.9 years ago by Michael Dondrup46k
1
gravatar for Asaf
6.9 years ago by
Asaf5.5k
Israel
Asaf5.5k wrote:

As was shown several times, genes that are usually transcribed together are sometimes transcribed separately. see http://www.ncbi.nlm.nih.gov/pubmed/19881496 for an example.

ADD COMMENTlink written 6.9 years ago by Asaf5.5k
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