Annotate multiple sample vcf files at once using ANNOVAR
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12 months ago

Hey everyone! I have obtained the 1092 individual sample vcf files after splitting the ALL.chr3.phase1_release_v3.20101123.snps_indels_svs.genotypes.HG00096.vcf.gz from 1000g .

I have to further process and annotate them using ANNOVAR. How can I do it at once? Do I have to take care of the version of the database while downloading?

PLEASE HELP!!!

annovar 1000g annotation • 743 views
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Entering edit mode
12 months ago

Dear dharaawasthi,

The Quick Start is quite helpful:

Then, specific databases are listed here:

Apologies if you have already read through these web-pages.

kevin

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