Question: Kraken2 Error in buildind NCBI bacterial database
0
gravatar for Shaminur
3 months ago by
Shaminur100
Dhaka University
Shaminur100 wrote:

Hi,

I am trying to build an NCBI RefSeq database of bacteria with Kraken2

kraken2-build --download-library bacteria --db bacteria

Error messages

rsync_from_ncbi.pl: unexpected FTP path (new server?) for na

Any solution? Thanks in advance.

sequencing refseq ncbi • 326 views
ADD COMMENTlink modified 3 months ago • written 3 months ago by Shaminur100
1
gravatar for Medhat
3 months ago by
Medhat8.8k
Texas
Medhat8.8k wrote:

Similar issue here -> https://github.com/DerrickWood/kraken/issues/114#issuecomment-610912961. Maybe it will help.

ADD COMMENTlink written 3 months ago by Medhat8.8k

Thank you Medhat, It works.

ADD REPLYlink written 3 months ago by Shaminur100

It was recently fixed: https://github.com/DerrickWood/kraken2/commit/7d9252d6116d2c0dc60563848f5ab0ab0ddc965e

ADD REPLYlink written 3 months ago by igor12k

Right, it looks like @shaminur has an old version, thanks igor.

ADD REPLYlink modified 3 months ago • written 3 months ago by Medhat8.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1081 users visited in the last hour
_