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Question: Kraken2 Error in buildind NCBI bacterial database
0
gravatar for Shaminur
3 months ago by
Shaminur • 100
Dhaka University
Shaminur • 100 wrote:

Hi,

I am trying to build an NCBI RefSeq database of bacteria with Kraken2

kraken2-build --download-library bacteria --db bacteria

Error messages

rsync_from_ncbi.pl: unexpected FTP path (new server?) for na

Any solution? Thanks in advance.
sequencing refseq ncbi • 326 views
ADD COMMENT • link •
modified 3 months ago • written 3 months ago by Shaminur • 100
1
gravatar for Medhat
3 months ago by
Medhat ♦ 8.8k
Texas
Medhat ♦ 8.8k wrote:

Similar issue here -> https://github.com/DerrickWood/kraken/issues/114#issuecomment-610912961. Maybe it will help.
ADD COMMENT • link written 3 months ago by Medhat ♦ 8.8k

Thank you Medhat, It works.

ADD REPLY • link written 3 months ago by Shaminur • 100

It was recently fixed: https://github.com/DerrickWood/kraken2/commit/7d9252d6116d2c0dc60563848f5ab0ab0ddc965e

ADD REPLY • link written 3 months ago by igor ♦ 12k

Right, it looks like @shaminur has an old version, thanks igor.

ADD REPLY • link modified 3 months ago • written 3 months ago by Medhat ♦ 8.8k
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