Entering edit mode
11.9 years ago
juwenting
•
0
I am trying to identify the orthologous CDS groups between different e.coli genomes. One of the ways described in a paper is that using all to all blastp to analyze all CDSs of different genomes. Anyone know how to do all to all blastp? Thanks!
Do you know how many gigabytes each side of that all to all matrix will be? say 10^2 alignments times 10^5 sequences times 10^5 sequences. Minus half if and only if the matrix is symmetric.