Entering edit mode
3.9 years ago
Chvatil
▴
130
Hello I have a specific variant file (vcf) dowload from
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000_genomes_project/release/20190312_biallelic_SNV_and_INDEL/ALL.chr9.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.vcf.gz.tbi
so I get a file called : ALL.chr9.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.vcf
wich is very huge and contains all the variant from the GRCh38 ref genome compared to all Human genomes.
but I'm only interested in the variant of the genome HG00479
Does someone have an idea how to extract this specific ones instead of all ?
Thank you very much