Question: How do I convert Hisat2 + stringtie gtf to EVM compatible gff3
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karthic • 100 wrote:
Hi,
I aligned my rnaseq to the genome using hisat2 and obtained gtf file using stringtie. Now how do i convert this gtf to EVM compatible gff3. I have checked the misc folder in the EVM software, there is no script for this.
Anyone please help
Karthic
You may want to check out 'The gffread utility' header here: http://ccb.jhu.edu/software/stringtie/gff.shtml