Sieving TFs from gene list
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8 months ago
LacquerHed • 0

Pretty basic question, but if dealing with a list of common gene names any quick way to filter out all TFs on the list? Thanks!

RNA-Seq scRNA-seq GenBank NCBI • 234 views
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There should be a GO term related to transcription factors that you could intersect your list with. Or something like "DNA binding" as GO term.

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If you can get access to TRANSFAC you could get a list of HUGO names from their database. If your list contains HUGO names, it is just a grep -v statement against this list.

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