Question: update Trinity -> v2.11.0
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gravatar for adampepper313
12 days ago by
adampepper3130 wrote:

Hi,

I am working on a project and I need to use Trinity, but whenever try to run Trinity, I am constantly receiving an update message:

** NOTE: Latest version of Trinity is v2.11.0, and can be obtained at: https://github.com/trinityrnaseq/trinityrnaseq/releases

Followed by,

Trinity Trinity-v2.11.0 requires salmon to be installed.  Get it here: https://combine-lab.github.io/salmon/  at /usr/local/bin/Trinity line 3973.

I am just unsure how to add this download onto command line and how download salmon.

I am running all my commands on command-line using secure shell as my program.

Any suggestions would be kindly appreciated!

ADD COMMENTlink written 12 days ago by adampepper3130

If you are unsure about how to install programs then follow this guide (just the first part that deals with conda) to install trinity: Creating workflows with snakemake and conda .

The message that you get at the beginning is just a NOTE it can be ignored. Your problem is that whoever has installed trinity on the server that you are using does not have an install of a different program called salmon available.

ADD REPLYlink modified 12 days ago • written 12 days ago by GenoMax92k
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