How do I plot them in IGV. I want it to display as bar or heatmap according to the methylation score.
I converted above data to .bed file; I can visualize, but not according to the scale of methylation score.
After going through IGV manual little deep; Icould able to plot it. SEG file format could support the methylation data to report it as heatmap or bar graphs. I plotted "methylation read coverage" as "num.mark" and methylation_score (C/C+T) as "seg.mean"