I am a beginner of bioinformatics. Today, I am trying to use GEO2R and get the Differential Expression Genes(DEGs) list. I could get the DEGs list sorted by "p-value".
My question is what kind of test is used in GEO2R. (student t-test? welch's t-test? DESeq? edgeR? Cuffdiff?)
I would appreciate it if someone could answer.