Downloading CADD scores
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6 months ago

I want to download CADD scores (All possible SNVs of GRCh38/hg38) from the following webpage:

https://cadd.gs.washington.edu/download

However for each download link it says US | DE. I can't find an explanation for what these two things mean. Can someone explain what it means or point me to some tutorial that explains it? I haven't been able to find anything. Also, I want to download the data using HTTP links using wget. However, I am not sure what HTTP link should look like. I did the following:

wget https://cadd.gs.washington.edu/download/whole_genome_SNVs.tsv.gz

But this http link didn't work. Insights will be appreciated.

CADD SNP • 235 views
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Don't forget to follow up on your threads, that is bad etiquette.

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. If an answer was not really helpful or did not work, provide detailed feedback so others know not to use that answer.

Upvote|Bookmark|Accept

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Entering edit mode
6 months ago

US | DE. I can't find an explanation for what these two things mean

US download from USA: e.g: https://krishna.gs.washington.edu/download/CADD/v1.6/GRCh38/whole_genome_SNVs.tsv.gz

DE download from germany ( Berlin Institute of Health) e.;g: https://kircherlab.bihealth.org/download/CADD/v1.6/GRCh38/whole_genome_SNVs.tsv.gz

I did the following: wget https://cadd.gs.washington.edu/download/whole_genome_SNVs.tsv.gz

I cannot see this url in the download section..

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Thank you. I was using wrong HTTP links.

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