We have assembled HiFi PacBio reads with an haploid-aware assembler (hifiasm). It is a tree genome
After analyzing the over 7900 contigs we got (expected genome size of 1,8Gb), we got these results obtained after using BUSCO, where it can be seen a very high number of duplicated sequences
Since the assembling has been done through an haploid aware assembler, we are wondering whether this high number of duplicated sequences is a consequence of the presence of the two haploid genomes in the analysis, or is a true indicative that our genome is full of duplicated and/or repetitive sequences
¿Any hint or clue?