Question: merge vcf files from different tools
gravatar for Sar
7 weeks ago by
Sar0 wrote:

hello !

I want to merge two VCF files (from variant calling) that I obtained with two different tools GATK and TVC but the problem is for the same position, each tool returns me a different variant (not all positions) . do you have an idea to normalize between the two positions and which variant should i choose?

sequencing snp next-gen • 99 views
ADD COMMENTlink written 7 weeks ago by Sar0

what was your command ? what were those two variants ?

ADD REPLYlink written 7 weeks ago by Pierre Lindenbaum134k
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