Question: GATK Funcotator missing DP and AF information from vcf file
0
gravatar for haiying.kong
5 weeks ago by
haiying.kong340
Germany
haiying.kong340 wrote:

I have posted a post on GATK forum. Please help me. https://gatk.broadinstitute.org/hc/en-us/community/posts/360076880272-GATK-Funcotator-missing-DP-and-AF-information-from-vcf-file

software error • 111 views
ADD COMMENTlink written 5 weeks ago by haiying.kong340

Is this a different post compared to one you posted earlier today: GATK Funcotator Variant_Classification If not this post will be closed.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by GenoMax96k

this post is different. The previous one is talking about Variant_Classification mistaken missense to intron. This one is talking about maf file could not catch the information in vcf file about DP and AF only for some variants.

You make me feel stalked.

ADD REPLYlink written 5 weeks ago by haiying.kong340

GATK support folks stop by Biostars only once in a while so you are likely to get an answer quicker on their own forum.

We want to make sure that content is not duplicated in multiple threads on Biostars.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by GenoMax96k

In addition to GATK folks, people all over around world who are using Funcotator. If some of them have encountered similar problems and resolved it, then they could help me.

Your claim is valid only if for one post, only one response is needed to be efficient.

The reality is that people could give input from different perspectives, and this is the whole point of having any forums.

ADD REPLYlink written 5 weeks ago by haiying.kong340
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