GATK Funcotator missing DP and AF information from vcf file
0
0
Entering edit mode
software error • 859 views
ADD COMMENT
0
Entering edit mode

Is this a different post compared to one you posted earlier today: GATK Funcotator Variant_Classification If not this post will be closed.

ADD REPLY
0
Entering edit mode

this post is different. The previous one is talking about Variant_Classification mistaken missense to intron. This one is talking about maf file could not catch the information in vcf file about DP and AF only for some variants.

You make me feel stalked.

ADD REPLY
0
Entering edit mode

GATK support folks stop by Biostars only once in a while so you are likely to get an answer quicker on their own forum.

We want to make sure that content is not duplicated in multiple threads on Biostars.

ADD REPLY
0
Entering edit mode

In addition to GATK folks, people all over around world who are using Funcotator. If some of them have encountered similar problems and resolved it, then they could help me.

Your claim is valid only if for one post, only one response is needed to be efficient.

The reality is that people could give input from different perspectives, and this is the whole point of having any forums.

ADD REPLY

Login before adding your answer.

Traffic: 2013 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6