Pairwise distance matrix using biopython
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22 months ago

Hello, I am wondering what is the most efficient way to calculate a distance matrix for a set of 400 sequences each is ~120 bp in length. I would prefer not use an outside tool but do it all in python

Thank you so much

python phylogentics biopython • 1.4k views
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If you already have an alignment, you can do this with the Phylo tools in biopython: https://biopython.readthedocs.io/en/latest/api/Bio.Phylo.TreeConstruction.html