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3.6 years ago
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Hi, I want to annotate functional data from whole genome metagenomics. Is there any existing pipelines/tools to build KEGG database/other for functional annotation?
Thanks in advance.
Hi, you can use
metaCyc
. CheckFun4me
for more information.https://link.springer.com/protocol/10.1007/978-1-4939-7015-5_3
https://sourceforge.net/projects/fun4me/
You can use eggnog-mapper (also available as a standalone, e.g. via (bio-)conda).
Thank you very much for your contribution here. I also found FMAP.