VCF to bcf conversion; vcf file header missing
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3.2 years ago
safiq713 ▴ 10

Could you please suggest me how can I add contig header into the vcf file

$ vcftools --vcf ZZ_ZW_BiSnps.recode.vcf --recode-bcf --contigs header.txt

VCFtools - 0.1.16
(C) Adam Auton and Anthony Marcketta 2009
Parameters as interpreted:
    --vcf ZZ_ZW_BiSnps.recode.vcf
    --contigs header.txt
    --recode-bcf
After filtering, kept 69 out of 69 Individuals
Outputting BCF file...
Error: Could not open `contigs file: header.txt`
vcftools VCF • 685 views
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Could not open `contigs file: header.txt`

header.txt is not in your current directory.

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