Tumor and matched normal data
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7 months ago

Hi,

How can I fetch tumor and matched normal data from SRA toolkit? Please suggest.

wes wgs • 222 views
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Entering edit mode
7 months ago
GenoMax 107k

Use sra-explorer (LINK) with right keywords. Get links to download data from results. Use directions included in: sra-explorer : find SRA and FastQ download URLs in a couple of clicks

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Ya, Thanks. SRA-explorer making the things convenient. But let's say if I want to download 100 breast tumor samples of different tumor stages and their matched normal. Then, How should I go and get the accession id to download it using SRA-explorer?

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