To retrive all sequences
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8 months ago

How to retrive all the cds sequences of mycobacterium tuberculosis( all strains available in ncbi)?

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8 months ago
GenoMax 109k

Answers here: How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?

Using genome_updater tool. M. tuberculosis complete genomes from RefSeq only.

./genome_updater.sh -g "taxids:1773"  -d "refseq" -l "Complete Genome" -f "cds_from_genomic.fna.gz" -o "Mtub_refseq_cg" -t 12 -m

With NCBI Datasets tool something like following:

./datasets download genome taxon 1773
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