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3.1 years ago
How to retrive all the cds sequences of mycobacterium tuberculosis( all strains available in ncbi)?
How to retrive all the cds sequences of mycobacterium tuberculosis( all strains available in ncbi)?
Answers here: How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
Using genome_updater
tool. M. tuberculosis complete genomes from RefSeq only.
./genome_updater.sh -g "taxids:1773" -d "refseq" -l "Complete Genome" -f "cds_from_genomic.fna.gz" -o "Mtub_refseq_cg" -t 12 -m
With NCBI Datasets tool something like following:
./datasets download genome taxon 1773
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