Hi, I have a list of Go Ids and the respective over-represented annotations, but most of them are the the child or sub-divisions of a main/parent term. How to hide them or may be statistically merge then under the main/parent category.
GO Term GO:0006351 transcription, DNA-dependent GO:0032774 RNA biosynthetic process GO:0016070 RNA metabolic process GO:0019222 regulation of metabolic process GO:0050794 regulation of cellular process GO:0050789 regulation of biological process GO:0065007 biological regulation GO:0048522 positive regulation of cellular process GO:0031323 regulation of cellular metabolic process GO:0090304 nucleic acid metabolic process GO:0080090 regulation of primary metabolic process GO:0060255 regulation of macromolecule metabolic process GO:0006139 nucleobase-containing compound metabolic process GO:0048518 positive regulation of biological process
So, the last terms like positive regulation of cellular process , positive regulation of biological process can go under the broad terms like regulation of biological process and regulation of biological process.
Can suggest some tool which can do it textually or graphically.
P.S. Revigo can do it, but something else which can be accessed from terminal or R