Question

Can We Know The "Direction" Form A Vcf File

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13.2 years ago

aghili.babak ▴ 70

Hello,

Given a VCF file and the info it has, is there a way we can analyze it and understand if the sequence is three prime to five prime or five prime to three prime?

vcf • 1.7k views

ADD COMMENT • link updated 13.2 years ago by Istvan Albert 103k • written 13.2 years ago by aghili.babak ▴ 70

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VCF position assumes the sequence is 5' -> 3' always

ADD REPLY • link 13.2 years ago by JC 13k

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http://www.biostars.org/post/show/47711/strand-information-on-vcf/ please use search first

ADD REPLY • link 13.2 years ago by Michael 56k

score 0 · Answer 1 · 2012-08-14

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13.1 years ago

Istvan Albert 103k

See http://www.biostars.org/post/show/47711/strand-information-on-vcf/

ADD COMMENT • link 13.1 years ago by Istvan Albert 103k