I know how to get this list from UCSC, but the problem is the after clicking the "get output", the list to big to be copied. What could be the mysql query for it.
mysql -h genome-mysql.cse.ucsc.edu -A -u genome -D mm9 -e 'select * from rmsk' but got the error
ERROR 1146 (42S02) at line 1: Table 'mm9.rmsk' doesn't exist
Also, in the ucsc downloads page, I am unable to find the rmsk table as a whole genome file (per chromosome exists).