Question

Older Dbsnp Human Data

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13.3 years ago

Daniel ▴ 50

Hi all,

I am searching for an older dbSNP human build (130) in XML format. I have looked through the dbSNP FTP and was not able to find an archived XML version of older dbSNP human data. Can anyone point towards an appropriate place ?

dbsnp • 3.4k views

ADD COMMENT • link updated 10.1 years ago by Biostar 20 • written 13.3 years ago by Daniel ▴ 50

Ram · Answer 1 · 2011-01-26

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13.3 years ago

Pierre Lindenbaum 161k

I'm afraid that the old XML files are not available anymore.

See: http://www.ncbi.nlm.nih.gov/books/NBK44443/#Build.Is_it_possible_to_get_the_XML_file

Is it possible to get the XML files for build 35? The download directories only have build 36.

Space limitations prevent us from keeping more than the most current build on our FTP site. The current XML files, however, do contain the mapping information for the previous build (i.e. build 35). (10/20/06)

See also this previous question on biostar: Finding Snps In A Given Range Using Dbsnp/Entrez

If you just need the data for ncbi36/snp130 you can always download the tabular file from the UCSC.

ADD COMMENT • link updated 4.6 years ago by Ram 43k • written 13.3 years ago by Pierre Lindenbaum 161k

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Thanks Pierre..

ADD REPLY • link 13.3 years ago by Daniel ▴ 50

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or, as always me after Pierre, you may browse the Ensembl archive to explore past variation data ;)

ADD REPLY • link 13.3 years ago by Jorge Amigo 14k