Question

Chicken Specific Database

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11.7 years ago

Raygozak ★ 1.4k

Hi, does anyone know if there is a specialized database for chicken pathways, gene information, etc, different than KEGG, or Entrez gene?

BTW, i googled it and either there isn't or it has a specific name i don't know about.

i'm looking something like yeastgenome.org for chickens.

Regards

gene pathway database • 3.1k views

ADD COMMENT • link updated 8.5 years ago by Biostar 20 • written 11.7 years ago by Raygozak ★ 1.4k

score 1 · Answer 1 · 2012-08-24

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11.7 years ago

JC 13k

Have you tried Ensembl and UCSC Genome Browser? Both sites have a lot of information, files to download and APIs to use.

ADD COMMENT • link 11.7 years ago by JC 13k

score 1 · Answer 2 · 2012-08-24

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11.7 years ago

Mary 11k

I just remembered: there is a gallus Reactome: http://gallus.reactome.org/ I don't know how current it is.

You can find a few others on the Resources Wiki: http://wiki.reactome.org/index.php/Reactome_Resource_Guide

ADD COMMENT • link 11.7 years ago by Mary 11k

score 1 · Answer 3 · 2012-08-28

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11.7 years ago

yeastgenome ▴ 10

There is also AgBase and chicken is one of the organisms they cover. They have GO annotations for chicken gene products and have links to other resources.

http://www.agbase.msstate.edu/cgi-bin/information/Chick.pl

ADD COMMENT • link 11.7 years ago by yeastgenome ▴ 10

score 0 · Answer 4 · 2012-10-27

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11.5 years ago

xanderpico ▴ 540

And don't forget about WikiPathways, an open source, community curated resource for biological pathways. All the content is under creative commons and there are lot of programmatic access options. Here's the list of their chicken pathways.

ADD COMMENT • link 11.5 years ago by xanderpico ▴ 540