9.3 years ago by
Santiago de Compostela, Spain
the only completely merged set 1000 genomes has released is their final release of 629 individuals, named Phase I, which currently appears as the latest news on their project's home page. it should be downloaded from EBI or NCBI depending on your current location.
the summary of all 3 pilots has been put in a single place (again, mirrored on both EBI and NCBI), although they haven't been merged into a single compressed vcf file as the final release. instead, individuals' data merged by their population of origin can be downloaded. you will find the pilot 1 data under the "low coverage" folder (~180 individuals sequenced at ~2-4x), the pilot 2 data under the "trio" folder (6 individuals making 2 trios sequenced at ~20-60x), and the pilot 3 data under the "exon" folder (~1000 genes from ~900 individuals sequenced at ~50x).