The Solid Software Tools website seems to have been abandoned by the vendor and the software that used to be hosted on the site is now unavailable. We decided to provide a mirror for the content originally distributed from that site starting with DeNovo Assembly Pipeline version 2.
Downloads can be accessed at http://www.biostars.org/static/downloads/solid/
DeNovo Assembly Pipeline
- SOLiD™ Accuracy Enhancement Tool
- Assembly Assistant for SOLiD
- Color space utilities: such as solid_denovo_preprocessor_v1.2.pl, miniAssembler.jar and others
- Download the full archive: solid-denovo-assembly.tar.gz
XSQ is a proprietary data format produced by the SOLiD instrument. It is a binary compressed format based on HDF5. The XSQ scripts from this package can transform this format into text csfasta and qual formats.
- XSQ Tools User Guide
- Download the full distribution: xsq.tools.tar.gz
Program to Convert SOLiD Sequencing reads (CSFASTA) to NCBI's SRF format
The original developer of these tools has contacted us with information to a “unofficial, but authorized” project on github to release code and binaries for these utilities.
If you have access to other tools that used to be hosted on the Solid Software Tools website please contact us at email@example.com.
Dear, all, I I discovered why the error looking for code assemble.pl.It was because I had not compiled the program asid.1.0. In the manual does not talk about it, only about velvet and mummer.
Who persists always reaches :D :D
thanks for following up on it
This is really useful.
Thanks to Mario Deng for submitting the XSQ Tools package
Hi I ran the program assemble.pl in the sample directory with the command:
And getting the output:
So, at the end of the process occurred some problem, someone has any suggestions which can have occurred.
Thanks in advance for any help,
This is not a traditional forum, new questions should be asked at top level and not as followups to other posts. Very few people read old posts to answer them.