Question: Any Reference Guided Assembly Tool Available Now
gravatar for zhuwei.cug
7.5 years ago by
zhuwei.cug30 wrote:

Could anyone suggest some reference guided assembly tools for cultivars' genome assembly?

assembly reference • 2.5k views
ADD COMMENTlink modified 7.5 years ago by Ali140 • written 7.5 years ago by zhuwei.cug30

Please provide more context. What do you mean by 'cultivars'? Any plant? Specific ones? What reference genome do you have available and which species have you sequenced and hope to assemble?

ADD REPLYlink written 7.5 years ago by Malachi Griffith18k
gravatar for Ali
7.4 years ago by
Iran, Islamic Republic Of
Ali140 wrote:

I think for your purpose Bowtie 2 is currently the best.

ADD COMMENTlink written 7.4 years ago by Ali140
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