Question: Firedock For Docking Purpose
0
gravatar for Dollas Salleh
6.9 years ago by
Besut
Dollas Salleh70 wrote:

Hi, anybody here has used Firedock ?.. I wonder to ask whether this server can use for protein-ligand docking...

• 1.5k views
ADD COMMENTlink written 6.9 years ago by Dollas Salleh70

swiss dock is good.

ADD REPLYlink written 6.9 years ago by Pappu1.9k

For swiss dock I have problem with ligand format. How to convert PDB files to MOL2 files for ligand?

ADD REPLYlink written 6.9 years ago by Dollas Salleh70

That ok.I got that. Using chimera..Thanks Pappu.

ADD REPLYlink written 6.9 years ago by Dollas Salleh70

AutoDock is also good for protein ligand docking...

ADD REPLYlink written 6.9 years ago by AsoInfo250

Having said that Glide from Schrödinger is the market leader right now. Their induced fit docking is also very good. Unfortunately they are not free.

ADD REPLYlink written 6.9 years ago by Pappu1.9k
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