Hi, anybody here has used Firedock ?.. I wonder to ask whether this server can use for protein-ligand docking...
swiss dock is good.
For swiss dock I have problem with ligand format. How to convert PDB files to MOL2 files for ligand?
That ok.I got that. Using chimera..Thanks Pappu.
AutoDock is also good for protein ligand docking...
Having said that Glide from Schrödinger is the market leader right now. Their induced fit docking is also very good. Unfortunately they are not free.
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