Firedock For Docking Purpose
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8.3 years ago

Hi, anybody here has used Firedock ?.. I wonder to ask whether this server can use for protein-ligand docking...

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swiss dock is good.

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For swiss dock I have problem with ligand format. How to convert PDB files to MOL2 files for ligand?

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That ok.I got that. Using chimera..Thanks Pappu.

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AutoDock is also good for protein ligand docking...

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Having said that Glide from Schrödinger is the market leader right now. Their induced fit docking is also very good. Unfortunately they are not free.

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