Tool:Deindexer - A Standalone Demultiplexing Tool For Illumina Platform
0
2
Entering edit mode
11.3 years ago
jingtao09 ▴ 110

deindexer

A Standalone Demultiplexing Tool for Illumina Platform

Features

  1. No need to edit SampleSheet.csv files
  2. Support your own barcode library
  3. Support many mismatches on barcode[s] (Currently Illumina only allows 1 mismatch)
  4. Easy to use: support single barcode to dual barcode or multiple barcodes protocol [even it has not exist yet]
  5. Fast: est. 4 million reads per minute. One hiseq lane dual indexes takes 30 mins. One non-hiseq lane takes 4 min or less using 400 barcodes.
  6. Grouping output files: customize the output layout within the config file

Project location: https://github.com/ws6/deindexer

illumina • 7.2k views
ADD COMMENT
0
Entering edit mode

Does it accept variable-length barcodes?

ADD REPLY

Login before adding your answer.

Traffic: 3434 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6