Looking For Test Bam File That Contains Variants And Multiple Forms Of Structural Arrangements

Question

[Zev.Kronenberg]

I am trying to validate some new methods and I am looking for good BAM file(s). I know I could simulate them myself, but I was wondering someone has already done this and spent the time to document their work.

It would be nice if the bam file(s) contained the following:

1) Multiple sequence IDs.

2) Variants.

3) All forms of structural rearrangements.

4) The more documentation the better.

5) Small.

I would be very grateful if someone was willing to share!

[Istvan Albert]

added some extra description into the title so that later it is easier to identify what the question is about.

[Jeremy Leipzig]

don't let anyone pass off TCGA as some kind of solution since it seems the barriers to access are ridiculously high

Answer 1

[Zev.Kronenberg]

Here is what I have found so far: https://github.com/arq5x/lumpy-sv/tree/master/data

Still looking for more.