Dear All,
Right now I am trying to visualize protein-protein interaction graph and clusters generated from that graph, something like this figure. After playing around with igraph package, I can mark the clusters, but could not figure out how to annotate each cluster. I am not planning to manually mark and annotate each cluster one-by-one. Do you know some graph visualization libraries, softwares that can do this ? (as of now I have tried only igraph and Cytoscape)
Thank you.
What's the problem with Cytoscape? It should work very well to do what you are describing.
"i before e except after c." And in protein. And other words. :)