Question: Finding Similarities In Predicted Enhancers Of Different Genes
gravatar for Diana
6.6 years ago by
Diana790 wrote:

Hi all,

I have predicted enhancers for 6 genes. I want to compare these enhancers with each other to find a subset out of all these which are similar to each other in terms of the motifs that they have. All I find are methods that do a pairwise comparison (such as D2z) between enhancers but I don't find that informative as I want enhancers which are similar from all 6 genes. Does any one know any methods that can accomplish that? or is it possible to extract from pairwise output such as D2z the enhancers from 6 genes that are all similar to each other?


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ADD COMMENTlink modified 3.7 years ago by Biostar ♦♦ 20 • written 6.6 years ago by Diana790
gravatar for aravind ramesh
6.5 years ago by
aravind ramesh510 wrote:

You may useful tools for extracting motiffs which are similar for all of the 6 sequences. YMF 3.0



Hope this will help you.

ADD COMMENTlink modified 6.5 years ago • written 6.5 years ago by aravind ramesh510

Thanks a lot aravind!

ADD REPLYlink written 6.5 years ago by Diana790

You can consider to Upvote, if my answer was useful to you.

ADD REPLYlink written 6.5 years ago by aravind ramesh510
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