Finding Similarities In Predicted Enhancers Of Different Genes
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11.3 years ago
Diana ▴ 910

Hi all,

I have predicted enhancers for 6 genes. I want to compare these enhancers with each other to find a subset out of all these which are similar to each other in terms of the motifs that they have. All I find are methods that do a pairwise comparison (such as D2z) between enhancers but I don't find that informative as I want enhancers which are similar from all 6 genes. Does any one know any methods that can accomplish that? or is it possible to extract from pairwise output such as D2z the enhancers from 6 genes that are all similar to each other?

Thanks!!!

enhancer • 2.5k views
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11.3 years ago

You may useful tools for extracting motiffs which are similar for all of the 6 sequences. YMF 3.0

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Hope this will help you.

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Thanks a lot aravind!

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