I'm quite new in phylogenetics.
UCSC supplies "Conservation scores for alignments of 46 vertebrate genomes with human" in its download database.
For for some species like horse, such data is not given. However, it gives pairwise alignments comparing 7 other vertebrate genomes with horse one by one.
I wonder if I can use such data to create "Conservation scores for alignments of 7 vertebrate genomes with horse".
What is the process to achieve this?
Thanks a lot.