Question: How To Label Several Groups Of Otus In A Phylogenetic Tree In Paml?
gravatar for cacaucenturion
5.1 years ago by
cacaucenturion210 wrote:

Hi all, I want to label some groups of OTUs in a tree. However, I find it difficult for me to do that since the tree contains many OTUs and the newick format makes it not easy to recognize the OTUs that I want to label. Could anyone help me with how to deal with it? Thanks!

phylogenetics paml • 1.6k views
ADD COMMENTlink modified 5.1 years ago by cts1.6k • written 5.1 years ago by cacaucenturion210

Try using APE the [R] package designed to deal with formatting and plotting trees.

ADD REPLYlink written 5.1 years ago by Zev.Kronenberg11k
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5.1 years ago by
cts1.6k wrote:

There are a few programs out there to visualise metadata associated trees. A couple of point and click examples are ARB or Topiary Explorer both of which can take auxiliary metadata files associated with the tree so that you can label, search and annotate

ADD COMMENTlink written 5.1 years ago by cts1.6k
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