Hi, I was hoping to compile somatic-sniper but I received some issues:
$ make Scanning dependencies of target sniper [ 10%] Building C object build/src/lib/sniper/CMakeFiles/sniper.dir/allele_util.c.o [ 20%] Building C object build/src/lib/sniper/CMakeFiles/sniper.dir/dqstats.c.o In file included from /home/user/somatic-sniper/src/lib/sniper/dqstats.c:1:0: /home/user/somatic-sniper/src/lib/sniper/dqstats.h:5:17: fatal error: bam.h: No such file or directory compilation terminated. make: *** [build/src/lib/sniper/CMakeFiles/sniper.dir/dqstats.c.o] Error 1 make: *** [build/src/lib/sniper/CMakeFiles/sniper.dir/all] Error 2 make: *** [all] Error 2
I'm using samtools v0.1.6 but I've noticed that the bam file is properly contained in the newest version of samtools. Please let me know if I'm blatantly overlooking something or if I'm missing a build requirement of some sort.
Thanks so much in advance.