Question: Identify Target Genes Of A Pathway
0
gravatar for Rima
8.0 years ago by
Rima0
Rima0 wrote:

How can I get the list of target genes of a pathway. I want to get the target genes for the wnt signaling pathway using KEGG or DAVID. Or is there any other way to do this ? How do I do that ?

Thanks

kegg target • 3.0k views
ADD COMMENTlink modified 8.0 years ago by Larry_Parnell16k • written 8.0 years ago by Rima0
2

so many question marks. Could you describe what you've done so far. Have you looked on the KEGG website?

ADD REPLYlink written 8.0 years ago by Russh1.2k

What do you mean by target genes, do you mean all genes in a given pathway ?

ADD REPLYlink written 8.0 years ago by Khader Shameer18k

"be nice". I removed all those question marks.

ADD REPLYlink written 8.0 years ago by Pierre Lindenbaum119k

haha, sorry. I'm keen to know if rima would like to work in R or in some other system for the KEGG stuff. I suspect DAVID won't be possible.

ADD REPLYlink written 8.0 years ago by Russh1.2k

@russH , the "be nice" was addressed to @rima :-)

ADD REPLYlink written 8.0 years ago by Pierre Lindenbaum119k

DAVID have just released a web service interface for beta testing

ADD REPLYlink written 8.0 years ago by Pi510
3
gravatar for Larry_Parnell
8.0 years ago by
Larry_Parnell16k
Boston, MA USA
Larry_Parnell16k wrote:

I have used the KEGG Wnt signaling pathway genes but also like that from NetPath. You can obtain the NetPath Wnt signaling pathway at http://www.netpath.org/pathways?path_id=NetPath_8. The data come via HPRD.

Wnt signaling at KEGG = 149 genes

Wnt signaling at NetPath = 105 genes

64 genes are shared.

ADD COMMENTlink modified 8.0 years ago • written 8.0 years ago by Larry_Parnell16k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1252 users visited in the last hour