Question: Why Wgcna Does Not Assign A Gene To The Module Of Highest Module Membership
gravatar for heartheone
6.5 years ago by
heartheone10 wrote:

I am using wgcna in co-expression analysis. I noted that one of the probe,

ILMN_1781516  0.826870232    .                                                                     0.807209729                      

I thought this probe should be assigned to module pink, but actually it belongs to module black as the geneinfo file generated by WGCNA. I wonder what goes wrong? Thanks!


ADD COMMENTlink modified 6.5 years ago • written 6.5 years ago by heartheone10

Did you resolved your question?


I have exactly the same problem.


i.e, gene Traf6 in my dataset:


kME.cor red = 0.5369

kME.cor lightgreen = 0.6913

kME.cor grey60 =0.5419


and the software assigns Traf6 to the red module. Why?

ADD REPLYlink written 5.2 years ago by aesteve0
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