Question: Database Of Cultured Bacterial 16S Rdna Sequences
0
gravatar for vijay
5.0 years ago by
vijay1.4k
Chennai
vijay1.4k wrote:

Dear All,

I would like to know if there is a database or a repository that contains 16s rDNA sequences obtained from cultured bacterial strains alone. I want to avoid the sequences obtained through uncultured environmental samples. Google has not helped me with this!!

Responses are highly appreciated.

database • 2.4k views
ADD COMMENTlink modified 5.0 years ago by skymningen330 • written 5.0 years ago by vijay1.4k
3
gravatar for skymningen
5.0 years ago by
skymningen330
Germany
skymningen330 wrote:

At the Ribosomal Database project, you can browse for (and download) only isolates.

ADD COMMENTlink written 5.0 years ago by skymningen330

Great!!! Thanks!! I have been missing this in RDP..

ADD REPLYlink written 5.0 years ago by vijay1.4k
0
gravatar for cts
5.0 years ago by
cts1.6k
Pasadena
cts1.6k wrote:

To my knowledge, the big two 16S databases (Greengenes, Silva) do not contain any easily accessible metadata for just the cultured isolates. Perhaps as a proxy you could get the 16S genes from completed genomes from either IMG or NCBI since the vast majority of those will be from cultures.

ADD COMMENTlink written 5.0 years ago by cts1.6k
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