Question: How To Select Snp Based On Their Physical Position, Genetic Position And Chromosome Number
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gravatar for blacktomato27
4.3 years ago by
United States
blacktomato2720 wrote:

Hi to all, I am new to this work, i have to select some SNPs from a group of SNPs on specific chromosome. Here i am giving my sample data

Assay    Physical position    Genetic position    Chr    #Poly    %Poly    Selected
1723    408068    0.3             0.3                  1             0          0%    
1727    463360    0.3         0.3                      1                 0                    0%    
486    657891                                          1                  6                   55%    
1708    880744    25.7        25.7                  1                  5                   45%    
1709    900596    25.8        25.8                  1                   3                   27%    
487    1174585                                          1                 0                    0%    
1641    1239146    27.3        27.3                              1                0        0%    
488    2276961                                          1               8                     73%    
489    2899077                                          1               11                    100%    
1714    3057570    34.2        34.2                              1               0          0%    
1721    3522443    34.2        34.2                              1               0          0%    
490    3528691                                          1               11                    100%    
491    4259452                                          1                0                    0%    
632    5481178                                          1             11                      100%             yes

Here i have to select some Assays for genotyping, can anyone help me to learn how to select assays for my problem. Any help in the form of information like articles or other form would be appreciated. Thanks

snp genotyping • 1.3k views
ADD COMMENTlink modified 4.3 years ago by bifurcafe60 • written 4.3 years ago by blacktomato2720
0
gravatar for bifurcafe
4.3 years ago by
bifurcafe60
Russia
bifurcafe60 wrote:

You can try SNPper -- Retrieve known SNPs by position or by association with a gene; save, filter, analyze, display or export SNP sets; explore known genes using names or chromosome positions.

ADD COMMENTlink written 4.3 years ago by bifurcafe60
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