I am looking for some fast and accurate method for the identification of genes in whole genome. I am using HMM based profiles and searched in protein database of respective genomes but unable to identify correctly (few genes returning). Blast is also good but I am wondering if some statistical method exist to do the task.
you have to use the search term "gene prediction"
There are lots of tools available to do this, depending on the organism. For example, GeneMark, Glimmer.
Thanks alot. I am using Plant fungal genome as a search again some particular gene called resistance genes. I am not sure if some tool is available for this purpose.