Entering edit mode
10.3 years ago
nazaninhoseinkhan
▴
520
Hi all, I've just started to import gene expression data sets in R. When I try to import data using this command:
gds<-getGEO(filename=system.file("extdata/GDS2478.soft.gz",package="GEOquery"))
I get this error:
Error in read.table(con, sep = "\t", header = FALSE, nrows = nseries) :
invalid 'nlines' argument
In addition: Warning messages:
1: In file(fname, "r") :
file("") only supports open = "w+" and open = "w+b": using the former
2: In file(con, "r") :
file("") only supports open = "w+" and open = "w+b": using the former
3: In file(fname, "r") :
file("") only supports open = "w+" and open = "w+b": using the former
I've searched internet for a useful guide, but unfortunately I have not been successful so far. I will appreciate any help. Nazanin
Edited tags for you. Trust me, "question" is not a useful tag :)