Understanding Fastqc Output- Please Help
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8.3 years ago
Kash ▴ 90

Hi

I did a quality analysis of my NGS data set using fastQC. I got several graphs.

  1. Duplication level
  2. kmer profile
  3. per base GC content
  4. per base N content
  5. per base quality
  6. per base sequence content
  7. per sequence GC content
  8. per sequence quality
  9. sequence length distribution

But y axis of each graph is not labeled and I'm having difficulties in understanding the graph. Can someone please tell me what the y axis says in these graphs. Thank you in advance

fastqc • 23k views
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Entering edit mode
8.3 years ago
Varun Gupta ★ 1.2k

Hi This link will help you understand every graph fastqc

Regards Varun

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