Question: Load Bigwig To Ucsc Genome Browser Without Http, Ftp
0
gravatar for roll
6.0 years ago by
roll290
United Kingdom
roll290 wrote:

Is it possible to load bigwig file to UCSC genome browser without having a http, ftp site? I just want to upload my data from my computer and view it. is this not possible?

bigwig ucsc • 5.3k views
ADD COMMENTlink modified 6.0 years ago by Pierre Lindenbaum126k • written 6.0 years ago by roll290
5
gravatar for Pierre Lindenbaum
6.0 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum126k wrote:

It's not possible but you can use a free site like dropbox.com to upload your bibwig file.

See "Hosting Custom Tracks for the UCSC Genome Browser on Dropbox" http://bergmanlab.smith.man.ac.uk/?p=1989

ADD COMMENTlink written 6.0 years ago by Pierre Lindenbaum126k

Thanks, is this also true for wig files? For the wig files it keeps giving me the memory error, when i try to upload it from the local drive. Can i ask for more memory for example?

ADD REPLYlink written 6.0 years ago by roll290

AFAIK you need to convert from wig to bigwig.

ADD REPLYlink written 6.0 years ago by Pierre Lindenbaum126k

thank you, that is great

ADD REPLYlink written 6.0 years ago by roll290

Hello, I'm trying to upload a bigwig file into UCSC but I always get the message

Error Unrecognized format line 1 of https://dl.dropboxusercontent.com/u/91564809/test.bigwig: (note: chrom names are case sensitive)

I have the format indicated at the post from Bergman lab (https://dl.dropboxusercontent.com/u/91564809/test.bigwig)

Thanks in advance!

ADD REPLYlink modified 8 weeks ago by RamRS25k • written 5.9 years ago by Gema Sanz70
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